Concept Class
The CONCEPT_CLASS table is a reference table, which includes a list of the classifications used to differentiate Concepts within a given Vocabulary. This reference table is populated with a single record for each Concept Class:
| Field | Required | Type | FK Table | Description |
|---|---|---|---|---|
| concept_class_id | Yes | varchar(20) | A unique key for each class. | |
| concept_class_name | Yes | varchar(255) | The name describing the Concept Class, e.g. “Clinical Finding”, “Ingredient”, etc. | |
| concept_class_concept_id | Yes | bigint | CONCEPT | A foreign key that refers to an identifier in the CONCEPT table for the unique Concept Class the record belongs to. |
Conventions
- There is one record for each Concept Class. Concept Classes are used to create additional structure to the Concepts within each Vocabulary. Some Concept Classes are unique to a Vocabulary (for example “Clinical Finding” in SNOMED), but others can be used across different Vocabularies. The separation of Concepts through Concept Classes can be semantically horizontal (each Class subsumes Concepts of the same hierarchical level, akin to sub-Vocabularies within a Vocabulary) or vertical (each Class subsumes Concepts of a certain kind, going across hierarchical levels). For example, Concept Classes in SNOMED are vertical: The classes “Procedure” and “Clinical Finding” define very granular to very generic Concepts. On the other hand, “Clinical Drug” and “Ingredient” Concept Classes define horizontal layers or strata in the RxNorm vocabulary, which all belong to the same concept of a Drug.
- The
concept_class_idfield contains an alphanumerical identifier, that can also be used as the abbreviation of the Concept Class. - The
concept_class_namefield contains the unabbreviated names of the Concept Class. - Each Concept Class also has an entry in the Concept table, which is recorded
in the
concept_class_concept_idfield. This is for purposes of creating a closed Information Model, where all entities in the OMOP CDM are covered by unique Concepts. -
Past versions of the OMOP CDM did not have a separate reference table for all Concept Classes. Also, the content of the old
concept_classand the newconcept_class_idfields are not always identical. A conversion table can be found here:Previous CONCEPT_CLASS Version 5 CONCEPT_CLASS_ID Administrative concept Admin Concept Admitting Source Admitting Source Anatomical Therapeutic Chemical Classification ATC Anatomical Therapeutic Chemical Classification ATC APC Procedure Attribute Attribute Biobank Flag Biobank Flag Biological function Biological Function Body structure Body Structure Brand Name Brand Name Branded Drug Branded Drug Branded Drug Component Branded Drug Comp Branded Drug Form Branded Drug Form Branded Pack Branded Pack CCS_DIAGNOSIS Condition CCS_PROCEDURES Procedure Chart Availability Chart Availability Chemical Structure Chemical Structure Clinical Drug Clinical Drug Clinical Drug Component Clinical Drug Comp Clinical Drug Form Clinical Drug Form Clinical finding Clinical Finding Clinical Pack Clinical Pack Concept Relationship Concept Relationship Condition Occurrence Type Condition Occur Type Context-dependent category Context-dependent CPT-4 Procedure Currency Currency Death Type Death Type Device Type Device Type Discharge Disposition Discharge Dispo Discharge Status Discharge Status Domain Domain Dose Form Dose Form DRG Diagnostic Category Drug Exposure Type Drug Exposure Type Drug Interaction Drug Interaction Encounter Type Encounter Type Enhanced Therapeutic Classification ETC Enrollment Basis Enrollment Basis Environment or geographical location Location Ethnicity Ethnicity Event Event Gender Gender HCPCS Procedure Health Care Provider Specialty Provider Specialty HES specialty Provider Specialty High Level Group Term HLGT High Level Term HLT Hispanic Hispanic ICD-9-Procedure Procedure Indication or Contra-indication Ind / CI Ingredient Ingredient LOINC Code Measurement LOINC Multidimensional Classification Meas Class Lowest Level Term LLT MDC Diagnostic Category Measurement Type Meas Type Mechanism of Action Mechanism of Action Model component Model Comp Morphologic abnormality Morph Abnormality MS-DRG Diagnostic Category Namespace concept Namespace Concept Note Type Note Type Observable entity Observable Entity Observation Period Type Obs Period Type Observation Type Observation Type OMOP DOI cohort Drug Cohort OMOP HOI cohort Condition Cohort OPCS-4 Procedure Organism Organism Patient Status Patient Status Pharmaceutical / biologic product Pharma/Biol Product Pharmaceutical Preparations Pharma Preparation Pharmacokinetics PK Pharmacologic Class Pharmacologic Class Physical force Physical Force Physical object Physical Object Physiologic Effect Physiologic Effect Place of Service Place of Service Preferred Term PT Procedure Procedure Procedure Occurrence Type Procedure Occur Type Qualifier value Qualifier Value Race Race Record artifact Record Artifact Revenue Code Revenue Code Sex Gender Social context Social Context Special concept Special Concept Specimen Specimen Staging and scales Staging / Scales Standardized MedDRA Query SMQ Substance Substance System Organ Class SOC Therapeutic Class Therapeutic Class UCUM Unit UCUM Canonical Canonical Unit UCUM Custom Unit UCUM Standard Unit Undefined Undefined UNKNOWN Undefined VA Class Drug Class VA Drug Interaction Drug Interaction VA Product Drug Product Visit Visit Visit Type Visit Type