Alchemist / Critical Care

Documentation on the data exchange format for HIC Critical Care and the Alchemist ingestion pipeline.

Basic Device Data

General

Home
Data Ingestion Process
Ontology Strategy
Quality Evaluation
Pseudonymisation
FAQ and Decisions

Data collection

Data Collection Overview
Uploading Data
OMOP Person
HIC Person
Physiology Basics
Pathology Basics
Drugs Basics
Device Basics
Procedure Basics
Diagnoses
Locations

Omop

Introduction

Authors
Glossary of Terms
License

Background

The Role of the Common Data Model
Design Principles
Data Model Conventions

Standardized Clinical Data Tables

CONDITION_OCCURRENCE
DEATH
DEVICE_EXPOSURE
DRUG_EXPOSURE
FACT_RELATIONSHIP
MEASUREMENT
NOTE
NOTE_NLP
OBSERVATION
OBSERVATION_PERIOD
PERSON
PROCEDURE_OCCURRENCE
SPECIMEN
VISIT_DETAIL
VISIT_OCCURRENCE

Standardized Health System Data Tables

CARE_SITE
LOCATION
PROVIDER

Shared Definitions

ATTRIBUTE_DEFINITION
COHORT_DEFINITION

Standardized Derived Elements

COHORT
COHORT_ATTRIBUTE
CONDITION_ERA
DOSE_ERA
DRUG_ERA

Standardized Vocabularies

CONCEPT
CONCEPT_ANCESTOR
CONCEPT_CLASS
CONCEPT_RELATIONSHIP
CONCEPT_SYNONYM
DOMAIN
DRUG_STRENGTH
RELATIONSHIP
SOURCE_TO_CONCEPT_MAP
VOCABULARY

Standardized Health Economics Data Tables

COST
PAYER_PLAN_PERIOD

Standardized Metadata

CDM_SOURCE
METADATA